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Stuffed Butternut Squash with Quinoa and Cranberries Recipe

If you’re looking for a comforting, cozy dish that’s bursting with fall flavors, you’re going to love this Stuffed Butternut Squash with Quinoa and Cranberries Recipe. It’s one of those recipes I reach for when I want something hearty but still fresh and vibrant. Roasted butternut squash makes the perfect vessel for a flavorful quinoa filling studded with sweet cranberries, crunchy pecans, and fragrant herbs. Stick around—I promise this recipe will become a favorite in your rotation just like it is in mine!

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Why You’ll Love This Recipe

  • Balanced Flavors: The sweetness of cranberries and apple pairs perfectly with earthy quinoa and warm spices.
  • Healthy & Satisfying: Packed with protein, fiber, and vitamins, it’s a nourishing meal you can feel good about.
  • Easy to Make Ahead: Prep the squash and filling in advance for an effortless weeknight dinner.
  • Impressive Presentation: Served in roasted squash halves, it’s as beautiful as it is delicious.
Two halves of roasted butternut squash sit side by side on a dark-brown baking tray with a textured surface. Each half is filled with a mix of quinoa, chopped nuts, herbs, and small white crumbles of cheese scattered on top. The squash flesh is bright orange with a smooth, slightly baked texture, while the skin is pale beige with some light browning. The filling has a mix of earth tones: light brown, red bits, and green herbs. The background surface is white marbled, with some small sprigs of herbs and a part of a fabric napkin visible at the tray’s edge. photo taken with an iphone --ar 2:3 --v 7 - Stuffed Butternut Squash with Quinoa and Cranberries, healthy stuffed squash, fall vegetarian dinner, quinoa and cranberry stuffed squash, cozy autumn vegan dish

Ingredients You’ll Need

Each ingredient here brings its own magic to the table. I especially love using fresh kale and tart dried cranberries—the textures and flavors play off each other so well. When you buy your butternut squash, try to pick one that feels heavy for its size and has smooth skin for the best roasting results.

Flat lay of a large halved butternut squash with bright orange flesh and pale beige skin, a small white bowl of golden olive oil, a medium red apple diced into cubes, half a white onion finely diced, fresh dark green kale leaves, two unpeeled garlic cloves, a small white bowl of clear vegetable broth, a small white bowl of plump dried cranberries, a small white bowl of chopped pecans, a small white bowl containing mixed dried thyme and sage leaves and ground cinnamon powder, a small white bowl filled with fluffy cooked quinoa, a few sprigs of fresh thyme placed next to a small pile of crumbly white feta cheese, all arranged symmetrically and proportionately on a clean white marble surface, soft natural light, photo taken with an iPhone, professional food photography style, fresh ingredients, white ceramic bowls, no bottles, no duplicates, no utensils, no packaging --ar 2:3 --v 7 --p m7354615311229779997 - Stuffed Butternut Squash with Quinoa and Cranberries, healthy stuffed squash, fall vegetarian dinner, quinoa and cranberry stuffed squash, cozy autumn vegan dish
  • Butternut Squash: A medium to large squash gives you perfect boat-shaped halves for stuffing.
  • Olive Oil: Helps the squash roast beautifully and adds a subtle richness.
  • Salt and Pepper: Simple seasoning for bringing out squash’s natural sweetness.
  • Salted Butter (or Olive Oil): Butter adds creamy depth; switch to olive oil for dairy-free options.
  • Apple: Adds a lovely sweet-tart bite that pairs perfectly with savory elements.
  • White Onion: Brings a mild, sweet base flavor after sautéing.
  • Kale: Provides earthiness and a healthy boost, but you can sub spinach if you prefer.
  • Garlic: Just a couple cloves add that essential savory kick.
  • Vegetable or Chicken Broth: Keeps the filling moist and flavorful as it simmers.
  • Dried Cranberries: Pops of sweetness that balance the smoky herbs elegantly.
  • Pecans: Adds crunch and a nutty undertone that makes every bite interesting.
  • Dried Thyme and Sage: These herbs lend a warm, autumnal aroma you’ll crave every fall.
  • Ground Cinnamon: Just a touch, to brighten the whole mixture subtly.
  • Cooked Quinoa: The hearty base of the stuffing, giving it protein and texture.
  • Feta Cheese (optional): If you eat dairy, sprinkle some on top for tangy creaminess.
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Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

I love how versatile this Stuffed Butternut Squash with Quinoa and Cranberries Recipe is — you can easily tailor it to suit what you have on hand or your dietary preferences. Here’s what I’ve tried:

  • Vegan Version: Swap the butter for olive oil and use vegetable broth, and you’ve got a comforting plant-based meal that my vegan friends rave about.
  • Add Protein: Sometimes I toss in cooked chicken or chickpeas for extra heartiness—both work wonderfully.
  • Nut-Free: If pecans aren’t your thing or you’ve got allergies, toasted pumpkin seeds or sunflower seeds give great texture.
  • Spicy Kick: I’ve experimented adding a pinch of cayenne or smoked paprika for a little warmth, which my family loves!

How to Make Stuffed Butternut Squash with Quinoa and Cranberries Recipe

Step 1: Roast Your Butternut Squash Just Right

After preheating your oven to 350°F, cut the squash lengthwise and scoop out the seeds. Place the halves cut-side down on a baking sheet, drizzle them with olive oil, and sprinkle with salt and pepper. Don’t skip flipping them halfway through roasting—that golden, tender flesh is key for scooping and stuffing later. When you scoop out the flesh, aim to keep the thickness even on both sides so they cook uniformly during the final bake.

Step 2: Sauté the Filling Ingredients

While your squash roasts, melt butter or warm olive oil in a skillet. Start with the apple and onion, cooking until they soften and start caramelizing—about 5 minutes. This step brings out their natural sweetness, which is so important here. Then add in kale and garlic, cooking briefly until fragrant and wilted, making your kitchen smell amazing.

Step 3: Bring the Filling Together

Pour in broth to keep everything moist, then add dried cranberries, chopped pecans, thyme, sage, and cinnamon. Let it simmer for just a couple minutes so the flavors meld beautifully. Finally, fold in cooked quinoa for that perfect texture combination. I like to taste and adjust seasoning here—sometimes a pinch more salt or a dash of pepper gives it just the right balance.

Step 4: Stuff the Squash and Bake Again

Spoon your flavorful quinoa mixture evenly into the squash halves. Don’t be shy here—pile it high! Return to the oven for another 20 minutes so everything melds and the top toasts slightly. This last bake is where the magic happens, blending the sweet and savory notes into one irresistible bite.

Step 5: Garnish and Serve

I usually sprinkle some crumbled feta cheese on top for a tangy finish—totally optional but so delicious if you eat dairy. Fresh thyme sprigs add a pretty touch and a little herbal brightness. Serve warm and watch your friends and family go crazy for this gorgeous dish!

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Pro Tips for Making Stuffed Butternut Squash with Quinoa and Cranberries Recipe

  • Even Squash Thickness: Scooping the squash flesh evenly helps it cook uniformly during the final bake, preventing soggy or undercooked spots.
  • Pre-cook Quinoa: Make sure your quinoa is fully cooked and fluffy before mixing—it ensures the filling isn’t too dry.
  • Don’t Overstuff: Piling the filling nicely is great, but too much can spill out and get messy in the oven.
  • Use Quality Dried Cranberries: Choose ones without added sugar for a better balance and less sweetness overpowering the dish.

How to Serve Stuffed Butternut Squash with Quinoa and Cranberries Recipe

The image shows three pieces of roasted orange squash halves on a white plate, each filled with a crumbly mixture of light brown quinoa, small red beans, green herbs, and bits of nuts. The filling is topped with small white cheese crumbles and a few green herb sprigs. The squash skin and the inner orange flesh's texture are clearly seen, with some black pepper seasoning. A knife with a wooden handle lies on the plate next to one of the squash halves, all placed on a white marbled surface. Photo taken with an iphone --ar 2:3 --v 7 - Stuffed Butternut Squash with Quinoa and Cranberries, healthy stuffed squash, fall vegetarian dinner, quinoa and cranberry stuffed squash, cozy autumn vegan dish

Garnishes

I love finishing this dish with fresh herbs like thyme or parsley—it adds a pop of green and a fresh flavor contrast. If I’m feeling indulgent, crumbled feta cheese is my go-to; it melts slightly from the heat and adds that savory tang. Toasted pecans sprinkled on top also bring a lovely crunch and nutty aroma.

Side Dishes

To make a full meal, I often pair this stuffed squash with a crisp green salad dressed in lemon vinaigrette or some roasted Brussels sprouts. A warm bowl of soup, like butternut squash bisque or lentil soup, complements the flavors wonderfully on chilly nights.

Creative Ways to Present

For a special occasion, I like to serve the squash halves on rustic wooden boards or colorful platters sprinkled with fresh herbs around the edges. Sometimes I hollow out mini squash instead of a big butternut for individual portions—guests love the personal touch! Adding edible flowers or a drizzle of maple syrup can make it feel festive and extra special.

Make Ahead and Storage

Storing Leftovers

If you have leftovers, store the stuffed squash halves in an airtight container in the fridge for up to 3-4 days. I recommend keeping the squash and filling together—that way, all the flavors continue to mingle, and reheating is a breeze.

Freezing

I’ve frozen this recipe successfully by wrapping individual stuffed squash halves tightly in foil and then placing them in a freezer-safe bag. They freeze well up to 2 months. When you’re ready, thaw overnight in the fridge before reheating. This is a great option for batch cooking and having comforting meals ready to go.

Reheating

To reheat, I pop the stuffed squash in a 350°F oven covered with foil for about 15-20 minutes until warmed through. This keeps the squash tender and prevents the filling from drying out. Microwaving works for convenience but sometimes makes the squash a bit rubbery, so I save it for when I’m in a real hurry.

FAQs

  1. Can I make this Stuffed Butternut Squash with Quinoa and Cranberries Recipe gluten-free?

    Absolutely! Quinoa is naturally gluten-free, so this dish is safe for gluten-sensitive eaters as long as your broth and all other ingredients are certified gluten-free.

  2. Is the squash skin edible if I roast it?

    Technically, yes—the skin softens a bit when roasted, but it tends to be tough and chewy, so I usually don’t eat it. Feel free to scoop just enough flesh to make the thickness even and discard the skin when serving.

  3. Can I use other grains instead of quinoa?

    Definitely! Brown rice, farro, or millet are good alternatives, but cooking times may vary slightly. Just cook your grain fully before mixing with the filling ingredients.

  4. How can I make this recipe vegan?

    Swap out the butter for olive oil or vegan butter, use vegetable broth, and skip the feta cheese topping. The dish is still full of flavor and satisfying.

Final Thoughts

This Stuffed Butternut Squash with Quinoa and Cranberries Recipe has become one of those dishes I turn to whenever I want something nourishing, pretty, and packed with fall vibes. I love how it feels both homemade and a bit special—not too fussy but definitely impressive on the dinner table. If you give this a try, I’d bet you’ll find yourself making it again and again, especially as the seasons turn cooler. It’s like a warm hug on a plate, and I can’t wait for you to enjoy it too.

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Stuffed Butternut Squash with Quinoa and Cranberries Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 138 reviews
  • Author: Stacy
  • Prep Time: 15 minutes
  • Cook Time: 1 hour 15 minutes
  • Total Time: 1 hour 30 minutes
  • Yield: 4 servings 1x
  • Category: Main Course
  • Method: Baking
  • Cuisine: American
  • Diet: Vegetarian

Description

A wholesome and flavorful stuffed butternut squash recipe featuring a savory quinoa filling with apple, kale, cranberries, pecans, and fragrant herbs. This baked dish makes a perfect comforting vegetarian main course or side that can be easily adapted for vegan diets.


Ingredients

Scale

Butternut Squash

  • 1 large butternut squash
  • 2 tablespoon olive oil
  • Salt and pepper, to season

Filling

  • 2 tablespoon salted butter, or olive oil for dairy-free & vegan
  • 1 medium apple, cored and diced
  • ½ white onion, finely diced
  • 1 cup chopped kale
  • 2 cloves garlic, minced
  • ¼ cup vegetable or chicken broth
  • ¼ cup dried cranberries
  • ¼ cup chopped pecans
  • 1 teaspoon dried thyme
  • 1 teaspoon dried sage
  • ½ teaspoon ground cinnamon
  • 1 cup cooked quinoa

Optional Garnish

  • Feta cheese, for serving (optional, not vegan or dairy-free)

Instructions

  1. Prepare the squash: Preheat your oven to 350°F (175°C). Slice the butternut squash in half lengthwise and scoop out the seeds. Place the halves cut-side up on a baking sheet. Drizzle with olive oil and season with salt and pepper, then flip them cut-side down on the sheet.
  2. Roast: Bake the squash for 20 minutes, then flip the halves cut-side up and continue baking for another 20 minutes or until the flesh is fork-tender. Scoop out some flesh from the fuller side so both halves are even in thickness.
  3. Make the filling: While the squash is roasting, melt the butter in a skillet over medium heat. Sauté the diced apple and onion for about 5 minutes until softened. Add the chopped kale and minced garlic, cooking until fragrant, approximately 2-3 minutes.
  4. Season and mix: Stir in the vegetable or chicken broth, dried cranberries, chopped pecans, dried thyme, dried sage, and ground cinnamon. Let the mixture simmer briefly. Then fold in the cooked quinoa until the filling is well combined.
  5. Stuff the squash: Spoon the quinoa filling evenly into the roasted butternut squash halves, pressing gently to fill them completely.
  6. Bake again: Return the stuffed squash to the oven and bake for an additional 20 minutes. This step helps meld the flavors together and lightly toast the filling for a delicious finish.
  7. Serve: Remove from the oven and optionally garnish with fresh thyme or crumbled feta cheese. Serve warm and enjoy this nutritious, hearty dish.

Notes

  • This recipe can be made ahead: Roast the squash and prepare the filling up to 1 day ahead. Store them separately, then stuff and bake just before serving.
  • Vegan adaptation: Use olive oil or vegan butter and vegetable broth to keep the recipe 100% plant-based.
  • Although the roasted skin of butternut squash is technically edible, it tends to be tough and chewy and is best removed if you prefer a softer texture.
  • Store leftovers in the refrigerator for up to 3-4 days.
  • For best results, see the full recipe post for step-by-step images, ingredient notes, variations, FAQs, and serving ideas.

Nutrition

  • Serving Size: 1/2 stuffed squash half (approx. 1 serving)
  • Calories: 380 kcal
  • Sugar: 10 g
  • Sodium: 320 mg
  • Fat: 16 g
  • Saturated Fat: 4 g
  • Unsaturated Fat: 11 g
  • Trans Fat: 0 g
  • Carbohydrates: 48 g
  • Fiber: 8 g
  • Protein: 8 g
  • Cholesterol: 12 mg

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