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Healthy Chicken Enchiladas with Homemade Sauce Recipe

If you’re looking for a flavorful, wholesome dinner that feels comforting but won’t weigh you down, you’re going to want to try this Healthy Chicken Enchiladas with Homemade Sauce Recipe. Trust me, when I first made this, I was blown away by how rich and satisfying the sauce tasted while still keeping everything light and nourishing. Plus, once you get the sauce down, these enchiladas come together pretty quickly, making them perfect for weeknight meals or a cozy weekend feast.

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Why You’ll Love This Recipe

  • Homemade Sauce Magic: Making your own enchilada sauce adds vibrant, fresh flavors without extra preservatives or sodium.
  • Healthier Ingredients: Using whole wheat tortillas and lean shredded chicken keeps this recipe light yet hearty.
  • Family Approved: This dish is always a hit with my crew — even picky eaters keep coming back for seconds.
  • Simple Prep: Once you master the sauce and filling, assembly is straightforward and great for batch cooking.
The image shows two rolled tortillas filled with a dark bean and corn mixture, placed side by side on a white oval plate. They are topped with melted golden and white cheese, sprinkled with small pieces of red onion and chopped green cilantro. A wedge of lime and a small bunch of fresh cilantro rest beside the tortillas. A silver fork with a light wooden handle lies on the plate near the top right. The plate sits on a creamy textured white cloth, on a white marbled surface. In the upper left corner, a white casserole dish with similar cheesy tortillas is partially visible. In the upper right, part of a glass with a light-colored drink and a lime wedge can be seen. photo taken with an iphone --ar 2:3 --v 7 - Healthy Chicken Enchiladas with Homemade Sauce, nutritious chicken enchiladas, homemade enchilada sauce, light chicken enchilada recipe, wholesome Mexican dinner

Ingredients You’ll Need

Each ingredient in this Healthy Chicken Enchiladas with Homemade Sauce Recipe plays a role in building layers of flavor and keeping things balanced. When shopping, I like to pick fresh produce and choose low-sodium broth to control saltiness.

Flat lay of a small white bowl of olive oil, a few minced garlic cloves, a simple white bowl filled with bright red tomato sauce, a white bowl with light golden chicken broth, a small white bowl holding smoky red adobo sauce, a small pile of chili powder, a tiny pile of ground cumin, a small heap of dried oregano leaves, a pinch of salt, a few black peppercorns, a chopped small yellow onion, two whole uncracked brown garlic bulbs, a white plate with shredded cooked chicken breast, a small white bowl of fresh yellow corn kernels, a small white bowl of black beans, a small bunch of fresh cilantro with vibrant green leaves, a stack of whole wheat flour tortillas, and a mound of shredded Mexican cheese on a white ceramic plate placed on a clean white marble surface, soft natural light, photo taken with an iPhone, professional food photography style, fresh ingredients, white ceramic bowls, no bottles, no duplicates, no utensils, no packaging --ar 2:3 --v 7 --p m7354615311229779997 - Healthy Chicken Enchiladas with Homemade Sauce, nutritious chicken enchiladas, homemade enchilada sauce, light chicken enchilada recipe, wholesome Mexican dinner
  • Olive oil: Helps sauté garlic and onions, and adds heart-healthy fats.
  • Garlic: Fresh minced garlic gives the sauce and filling a deeply savory punch.
  • Tomato sauce: The base for our enchilada sauce, choose one with no added sugar for best flavor.
  • Low sodium chicken broth: Keeps the sauce moist and flavorful while controlling sodium levels.
  • Adobo sauce: This smokey chipotle-infused sauce from a can of chipotle peppers adds subtle heat and complexity.
  • Chili powder, cumin, oregano, salt, and pepper: Key spices that give the sauce and filling that classic Mexican flavor profile.
  • Yellow onion: Adds a sweet, caramelized depth when sautéed.
  • Cooked shredded chicken: I usually use leftover rotisserie chicken; it’s easy and juicy.
  • Corn: Fresh or frozen corn kernels add a touch of sweetness and texture.
  • Black beans: Adds fiber and protein, making the filling even more satisfying.
  • Cilantro: Fresh and bright, this herb is essential for that classic enchilada zip.
  • Whole wheat flour tortillas: The healthier alternative to regular tortillas, adding some wholesome fiber.
  • Mexican shredded cheese: Melts beautifully; I often use a blend of cheddar and Monterey Jack for gooey goodness.
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Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

I love how versatile this Healthy Chicken Enchiladas with Homemade Sauce Recipe is. I’ve swapped in different veggies or proteins, and each variation comes out delicious — so please feel free to put your own spin on it!

  • Vegetarian version: Swap shredded chicken for sautéed mushrooms and add extra black beans or sweet potatoes for a hearty, meat-free filling — my friends rave about this twist!
  • Spice it up: If you like more heat, I double the adobo sauce or add chopped fresh jalapeños — it gives it a lively kick without overpowering the flavors.
  • Cheese-free: Use a dairy-free cheese or leave off cheese entirely for a lighter dish; the homemade sauce packs enough punch to keep things tasty.
  • Low carb swaps: Try using low-carb tortillas or serve the filling over cauliflower rice for a grain-free option.

How to Make Healthy Chicken Enchiladas with Homemade Sauce Recipe

Step 1: Make the Flavor-Packed Enchilada Sauce

Start by heating olive oil in a medium saucepan over medium heat. I always wait until the oil is hot but not smoking, then add the minced garlic. Sauté it just about a minute until fragrant — you don’t want it browned or bitter. Next, dump in the tomato sauce, chicken broth, adobo sauce, and all the spices. Stir everything together and bring it to a boil. Once boiling, lower the heat and let it simmer gently for 5–10 minutes, stirring now and then until the sauce thickens just enough to coat the back of a spoon. This step is where the magic happens; that smoky, spicy flavor really develops here!

Step 2: Prepare the Savory Chicken Filling

While the sauce simmers, heat a tablespoon of olive oil in a large skillet on medium. Toss in the chopped yellow onions and minced garlic, cooking until they’re soft and translucent — about 2 minutes. Then add the shredded chicken, corn, black beans, half a cup of your homemade enchilada sauce, and the spices like chili powder and cumin. Don’t forget the chopped cilantro! Stir everything well and let it cook together for about 5 minutes until warmed through and well combined. This filling is bursting with flavor thanks to the layers of seasoning and fresh herbs.

Step 3: Assemble the Enchiladas

Lightly spray a 13×9-inch casserole dish with nonstick spray, then spread a little bit of your enchilada sauce on the bottom to prevent sticking. Now, take one whole wheat tortilla and fill it with about a heaping 1/3 cup of the chicken mixture. Roll it up as tightly as you can — this just helps keep everything neat during baking — and place it seam-side down or up (I personally prefer seam-side up so they don’t unroll). Continue filling and rolling all eight tortillas, lining them up side by side in the casserole dish.

Step 4: Top and Bake Until Bubble-Worthy

Pour the remaining enchilada sauce evenly over the rolled tortillas, making sure to cover as much as you can — this keeps them moist and adds that shiny saucy goodness. Then sprinkle shredded Mexican cheese all over the top. Bake the dish uncovered in your 375°F oven for about 20 to 25 minutes. You’ll know it’s ready when the cheese has melted fully and the sauce around the edges is bubbling happily. The smell alone will have you drooling!

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Pro Tips for Making Healthy Chicken Enchiladas with Homemade Sauce Recipe

  • Sauce Consistency: If your enchilada sauce feels too thick after simmering, gently thin it out with a splash of chicken broth or water. It should be pourable but not runny.
  • Shredded Chicken Shortcut: Rotisserie chicken works great here—shred it while still warm for easier shredding and juicier filling.
  • Tortilla Warming: Warm your tortillas slightly in the microwave or on a skillet so they’re pliable and won’t crack when rolling.
  • Don’t Overfill: Leaving about a 1/3 cup of filling per tortilla helps avoid spillage and keeps rolls neat and manageable.

How to Serve Healthy Chicken Enchiladas with Homemade Sauce Recipe

The image shows two enchiladas in a white baking dish, lifted by a spatula with a woman's hand holding it. Each enchilada has at least three visible layers: the soft tortilla on the outside, a filling of shredded meat mixed with corn and sauce inside, and a melted layer of cheese on top with melted orange and white colors. The top is sprinkled with small bits of red onion and chopped green herbs. The dish sits on a white marbled surface, with blurred green glasses and another bowl in the background. photo taken with an iphone --ar 2:3 --v 7 - Healthy Chicken Enchiladas with Homemade Sauce, nutritious chicken enchiladas, homemade enchilada sauce, light chicken enchilada recipe, wholesome Mexican dinner

Garnishes

I usually top these enchiladas with plenty of fresh cilantro, a dollop of Greek yogurt or light sour cream for creaminess, and a squeeze of lime for brightness. Sometimes I add sliced avocado or a sprinkle of chopped green onions — these fresh touches really lift the dish.

Side Dishes

My go-to sides are simple but complement the flavors perfectly: a fresh green salad, Mexican-style street corn salad, or a light cabbage slaw with lime and chili powder. These sides add crunch and coolness against the warm enchiladas.

Creative Ways to Present

For special occasions, I like to serve these enchiladas in individual ramekins layered with sauce and cheese, then baked and presented with garnishes on top. It feels fancy but keeps the cozy vibes. You can also top with colorful diced tomatoes and slices of jalapeño for a festive fiesta on the plate!

Make Ahead and Storage

Storing Leftovers

I let the enchiladas cool completely, then cover the dish tightly with foil or plastic wrap and store in the refrigerator. They keep well for up to 3-4 days, making them perfect for easy lunches or dinners later in the week.

Freezing

You can freeze this recipe either before baking or after it’s cooked. Just wrap tightly with foil and plastic wrap and freeze for up to 3 months. When you want to enjoy, thaw in the fridge overnight before reheating.

Reheating

Reheat leftovers covered in the oven at 350°F for 15-20 minutes until warmed through and cheese is melty again. If you’re in a hurry, heat individual portions in the microwave covered loosely with a damp paper towel to keep moisture.

FAQs

  1. Can I make the enchilada sauce ahead of time?

    Absolutely! The homemade enchilada sauce can be made up to 3 days in advance and kept refrigerated in an airtight container. This actually helps the flavors deepen even more, so it’s a win-win.

  2. What can I substitute if I don’t have adobo sauce?

    If you don’t have adobo sauce handy, you can use a small amount of chipotle chili powder or smoked paprika combined with a dash of hot sauce to mimic the smoky heat. Start small and adjust to taste.

  3. Can I use corn tortillas instead of whole wheat?

    You can! Just be sure to warm them well to prevent cracking when rolling. Corn tortillas are naturally gluten-free but tend to be less flexible than flour ones, so warming is essential.

  4. How spicy are these enchiladas?

    The heat level is moderate — smoky with a gentle kick from the adobo sauce and chili powder. You can always adjust by using less or more adobo sauce depending on your spice preference.

Final Thoughts

Making this Healthy Chicken Enchiladas with Homemade Sauce Recipe has become one of my favorite ways to enjoy Mexican-inspired comfort food without the guilt. I genuinely love how the homemade sauce takes center stage and how easy it is to tailor the filling to suit your tastes and what you have on hand. Give it a try for your next dinner — I promise your family will go crazy for it, and you’ll enjoy feeling good about what’s on the table. Let me know how it turns out!

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Healthy Chicken Enchiladas with Homemade Sauce Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 74 reviews
  • Author: Stacy
  • Prep Time: 10 minutes
  • Cook Time: 45 minutes
  • Total Time: 55 minutes
  • Yield: 8 servings 1x
  • Category: Main Course
  • Method: Baking
  • Cuisine: Mexican
  • Diet: Low Fat

Description

These Healthy Chicken Enchiladas feature a flavorful homemade enchilada sauce and a hearty chicken filling with black beans and corn. Wrapped in whole wheat tortillas and baked with melted cheese, this recipe provides a delicious, nutritious twist on a classic Mexican favorite that’s perfect for a wholesome weeknight dinner.


Ingredients

Scale

For the Enchilada Sauce:

  • 1 Tbsp olive oil
  • 1 Tbsp garlic, minced
  • 2 cups tomato sauce
  • 1 cup low sodium chicken broth
  • 2 Tbsp adobo sauce (from canned chipotle peppers)
  • 1 Tbsp chili powder
  • 1/2 tsp cumin
  • 1/4 tsp dried oregano
  • 1/4 tsp salt
  • 1/4 tsp black pepper

For the Chicken Filling:

  • 1 small yellow onion, chopped
  • 2 cloves garlic, minced
  • 2 cups cooked shredded chicken (about 2 breasts)
  • 1/2 cup corn (fresh or frozen)
  • 1/2 cup black beans
  • 1/2 cup enchilada sauce you just made
  • 1/2 tsp chili powder
  • 1/4 tsp cumin
  • 1/4 cup chopped cilantro

For the Enchiladas:

  • 8 (7-inch) whole wheat flour tortillas
  • 1 cup shredded Mexican cheese
  • Fresh cilantro and other favorite toppings, to garnish

Instructions

  1. Preheat Oven: Preheat your oven to 375 degrees F to prepare for baking the enchiladas.
  2. Make Enchilada Sauce: Heat olive oil in a medium saucepan over medium heat and sauté minced garlic for about 1 minute until fragrant. Add tomato sauce, chicken broth, adobo sauce, chili powder, cumin, oregano, salt, and pepper. Stir well, bring the mixture to a boil, then reduce to low and simmer for 5 to 10 minutes until slightly thickened.
  3. Prepare Chicken Filling: In a large skillet over medium heat, heat olive oil and sauté chopped onions and minced garlic until softened (about 2 minutes). Add shredded chicken, corn, black beans, 1/2 cup of the enchilada sauce, chili powder, cumin, salt, and chopped cilantro. Stir well and cook for an additional 5 minutes to heat through.
  4. Assemble Enchiladas: Lightly coat a 13×9-inch casserole dish with nonstick spray and spread a thin layer of enchilada sauce on the bottom. Spoon about 1/3 cup of the chicken filling onto each whole wheat tortilla, roll tightly, and place seam-side up in the casserole dish side by side until the dish is full.
  5. Top and Bake: Pour the remaining enchilada sauce evenly over the rolled tortillas and sprinkle with shredded Mexican cheese. Bake in the preheated oven for 20 to 25 minutes, until the cheese is melted and the sauce is bubbly. Garnish with fresh cilantro and your favorite toppings before serving.

Notes

  • Use low sodium chicken broth and reduced-sodium tomato sauce to control salt content.
  • Whole wheat tortillas add fiber and nutrients, making the dish healthier than traditional flour tortillas.
  • You can substitute cooked rotisserie chicken for convenience.
  • Adjust the adobo sauce amount to control the spice level according to your preference.
  • Feel free to add other vegetables like bell peppers or zucchini to the filling for extra nutrition.
  • If you prefer a dairy-free option, omit the cheese or use a vegan cheese alternative.

Nutrition

  • Serving Size: 1 enchilada
  • Calories: 320
  • Sugar: 4g
  • Sodium: 390mg
  • Fat: 12g
  • Saturated Fat: 4g
  • Unsaturated Fat: 7g
  • Trans Fat: 0g
  • Carbohydrates: 30g
  • Fiber: 5g
  • Protein: 25g
  • Cholesterol: 65mg

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